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根瘤菌科

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根瘤菌科
农杆菌正在入侵蘿蔔細胞
科学分类 编辑
域： 细菌域 Bacteria
门： 假單胞菌門 Pseudomonadota
纲： α-变形菌纲 Alphaproteobacteria
目： 根瘤菌目 Rhizobiales
科： 根瘤菌科 Rhizobiaceae
Conn, 1938
模式属
根瘤菌屬 Rhizobium
Frank, 1889
属[1]

见正文

根瘤菌科（学名：Rhizobiaceae）是屬於變形菌門中的一個科，包含許多種的根瘤菌（但不是全部）和植物的寄生生物，如：土壤桿菌屬。正如所有變形菌門中的生物，在根瘤菌科中也全屬於革蘭氏陰性菌。它們是好氧菌且細胞形狀通常為桿狀。其中有多種菌屬於固氮生物，它們有固氮的能力且與植物共生。[2]

下属物种

本属包括以下物种：

  • 土壤杆菌属 Agrobacterium Conn 1942
  • 阿伦斯氏菌属 Ahrensia Uchino et al., 1999
    • 基尔阿伦斯氏菌 Ahrensia kielensis[3]
    • Ahrensia kieliense Uchino, Hirata, Yokota & Sugiyama, 1998
    • Ahrensia marina Liu et al., 2016
  • 异根瘤菌属 Allorhizobium de Lajudie et al. 1998
  • 氨基杆菌属 Aminobacter Urakami et al., 1992
  • 嗜碳杆菌属 Carbophilus Meyer et al., 1994
  • Ciceribacter Kathiravan et al. 2013
    • Ciceribacter azotifigens Siddiqi et al. 2018
    • Ciceribacter daejeonensis (Quan et al. 2005) Rahi et al. 2021
    • Ciceribacter ferrooxidans Deng et al. 2020
    • Ciceribacter lividus Kathiravan et al. 2013
    • Ciceribacter naphthalenivorans (Kaiya et al. 2018) Rahi et al. 2021
    • Ciceribacter selenitireducens (Hunter et al. 2008) Rahi et al. 2021
    • Ciceribacter sichuanensis Zhang et al. 2024
    • Ciceribacter thiooxidans Deng et al. 2017
  • Crabtreella Xie and Yokota 2006, 为Shinella An et al. 2006的异名
  • Endobacterium Menéndez et al. 2021
    • Endobacterium cereale Menéndez et al. 2021，也拼作：Endobacterium cerealis
    • Endobacterium yantingense (Chen et al. 2015) Kuzmanović et al. 2022
  • 剑菌属 Ensifer Casida 1982
  • Ferirhizobium Romanenko et al. 2024
    • Ferirhizobium litorale Romanenko et al. 2024[4]
  • Ferranicluibacter Roca-Couso et al. 2023
    • Ferranicluibacter rubi Roca-Couso et al. 2023[5]
  • Gellertiella Tóth et al. 2017
    • Gellertiella hungarica Tóth et al. 2017
  • 地根瘤菌属 Georhizobium Cao et al. 2020
  • Hoeflea Peix et al. 2005
    • Hoeflea alexandrii Palacios et al. 2006
    • Hoeflea algicola Baek et al. 2023
    • Hoeflea anabaenae Stevenson et al. 2011
    • Hoeflea halophila Jung et al. 2013
    • Hoeflea marina Peix et al. 2005
    • Hoeflea olei Rahul et al. 2015
    • Hoeflea phototrophica Biebl et al. 2006
    • Hoeflea poritis Zhang et al. 2023[6]
    • Hoeflea prorocentri Yang et al. 2018
    • Hoeflea siderophila Sorokina et al. 2012
    • Hoeflea suaedae Chung et al. 2013
    • Hoeflea ulvae Baek et al. 2023
  • Lentilitoribacter Park et al. 2013
    • Lentilitoribacter donghaensis Park et al. 2013
  • 韧皮部杆菌属 Liberibacter Fagen et al. 2014
  • Martelella Rivas et al. 2005
    • Martelella alba Li et al. 2021
    • Martelella caricis Lee 2019
    • Martelella endophytica Bibi et al. 2013
    • Martelella limonii Chung et al. 2016
    • Martelella lutilitoris Kim and Lee 2020
    • Martelella mangrovi Zhang and Margesin 2014
    • Martelella mediterranea Rivas et al. 2005
    • Martelella radicis Zhang and Margesin 2014
    • Martelella soudanensis Lee et al. 2021
    • Martelella suaedae Chung et al. 2016
  • 枝动菌属 Mycoplana Gray and Thornton 1928
  • Neopararhizobium Hoerdt et al. 2020
    • Neopararhizobium haloflavum (Shen et al. 2018) Hoerdt et al. 2020
  • 新根瘤菌属 Neorhizobium Mousavi et al. 2015
  • Onobrychidicola Ashrafi et al. 2023
    • Onobrychidicola muellerharveyae Ashrafi et al. 2023[7]
  • Paramartelella Ma et al. 2023
    • Paramartelella alba (Li et al. 2021) Ma et al. 2023[8]
  • Pararhizobium Mousavi et al. 2016
    • Pararhizobium antarcticum Naqvi et al. 2017
    • Pararhizobium arenae (Zhang et al. 2017) Kuzmanović et al. 2022[9]
    • Pararhizobium capsulatum (Hirsch and Müller 1986) Mousavi et al. 2016
    • Pararhizobium gei (Shi et al. 2016) De Lajudie and Young 2017
    • Pararhizobium gei (Shi et al. 2016) Zhang et al. 2024
    • Pararhizobium giardinii (Amarger et al. 1997) Mousavi et al. 2016
    • Pararhizobium haloflavum Shen et al. 2018
    • Pararhizobium helanshanense (Qin et al. 2012) Mousavi et al. 2015
    • Pararhizobium herbae (Ren et al. 2011) Mousavi et al. 2016
    • Pararhizobium mangrovi Li et al. 2021
    • Pararhizobium polonicum Puławska et al. 2017
    • Pararhizobium qamdonense Zhang et al. 2024
    • Pararhizobium sphaerophysae (Xu et al. 2012) Mousavi et al. 2015
  • Pseudorhizobium Kimes et al. 2017
    • Pseudorhizobium banfieldiae Lassalle et al. 2021
    • Pseudorhizobium endolithicum (Parag et al. 2014) Lassalle et al. 2021
    • Pseudorhizobium flavum (Gu et al. 2014) Lassalle et al. 2021
    • Pseudorhizobium halotolerans Lassalle et al. 2021
    • Pseudorhizobium marinum (Liu et al. 2015) Lassalle et al. 2021
    • Pseudorhizobium pelagicum Kimes et al. 2017
    • Pseudorhizobium tarimense (Turdahon et al. 2013) Kuzmanović et al. 2022[10]
  • 根瘤菌属 Rhizobium Frank 1889
  • 申氏菌属 Shinella An et al. 2006
  • 中华根瘤菌属 Sinorhizobium Chen et al. 1988，为Ensifer Casida 1982的异名

參考

  1. ^ List of Prokaryotic names with Standing in Nomenclature 互联网档案馆的存檔，存档日期2010-05-04.
  2. ^ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. ISBN 978-0-387-24145-6.
  3. ^ Ahrens, R. (1968). Taxonomische Untersuchungen an sternbildenden Agrobacterium-Arten aus der westlichen Ostsee. Kiel.Meeresforsch. 24 : 147-173 .
  4. ^ Romanenko L, Otstavnykh N, Tanaka N, Kurilenko V, Svetashev V, Tekutyeva L, Mikhailov V, Isaeva M. Characterization and Genomic Analysis of Fererhizobium litorale gen. nov., sp. nov., Isolated from the Sandy Sediments of the Sea of Japan Seashore. Microorganisms 2023; 11:2385.
  5. ^ Roca-Couso R, Flores-Felix JD, Igual JM, Garcia-Fraile P, Velazquez E, Rivas R. Ferranicluibacter rubi gen. nov., sp. nov., a new member of family Rhizobiaceae isolated from stems of elmleaf blackberry (Rubus ulmifolius Schott) in Northwest Spain. Int J Syst Evol Microbiol 2023; 73:5789.
  6. ^ Zhang G, Zhang Z, Sajid S, Wei Q, Cai L. Hoeflea poritis sp. nov., isolated from a bleached scleractinian coral Porites lutea. Int J Syst Evol Microbiol 2023; 73:6097.
  7. ^ Ashrafi S, Kuzmanovic N, Patz S, Lohwasser U, Bunk B, Sproer C, Lorenz M, Elhady A, Fruhling A, Neumann-Schaal M, et al. Two New Rhizobiales Species Isolated from Root Nodules of Common Sainfoin (Onobrychis viciifolia) Show Different Plant Colonization Strategies. Microbiol Spectr 2022; 10:e0109922.
  8. ^ Ma T, Xue H, Piao C, Jiang N, Li Y. Phylogenomic reappraisal of the family Rhizobiaceae at the genus and species levels, including the description of Ectorhizobium quercum gen. nov., sp. nov. Front Microbiol 2023; 14:1207256.
  9. ^ Kuzmanovic N, Fagorzi C, Mengoni A, Lassalle F, diCenzo GC. Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation. Int J Syst Evol Microbiol 2022; 72:5243.
  10. ^ Kuzmanovic N, Fagorzi C, Mengoni A, Lassalle F, diCenzo GC. Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation. Int J Syst Evol Microbiol 2022; 72:5243.
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